Data from analyses of addled and deserted sea eagle eggs collected by licensed collectors in Scotland. Contaminants reported include polychlorinated biphenyls (PCBs), organochlorine pesticides or their persistent metabolites, and a range of metals and metaloids. The white-tailed sea eagle has been re-introduced to a number of Scottish Islands since the 1980s. The Predatory Bird Monitoring Scheme (PBMS) is a long-term, national monitoring scheme that quantifies the concentrations of contaminants in the livers and eggs of selected species of predatory and fish-eating birds in Britain. Full details about this dataset can be found at https://doi.org/10.5285/72ed6237-aedf-43a7-b9e3-eef95320a2bb